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Dr. Gillian Taylor's disappearance ended up on an episode of Unsolved Mysteries.
Imagine it from the perspective of the people in 1986. Gillian Taylor shows up for work and discovers that the whales have been carted off to Alaska without her knowledge. She slaps her boss while calling him a son-of-a-bitch, then drives off in her pickup truck.
Later, her truck is discovered in Golden Gate Park, and when she doesn't report to work later on, the police open up a missing person investigation. The media gets wind of the Cetacean Institute's assistant director going missing, and they put her face all over the evening news.
This is where it gets weird. Gillian's photo is recognized by one of the witnesses at Mercy Hospital as one of the people who sprung the FBI's strange Russian prisoner and then vanished. Witnesses also say that she was assisted by two other guys, one of whom is later identified by others as a guy that Dr. Taylor was seen talking to at the Institute, and later having dinner with at the Italian restaurant.
Investigators search for all possible leads, and they go through Dr. Taylor's personal life, but come up with nothing. So all of this, combined with the fact that her truck was discovered in a section of Golden Gate Park where people had seen strange goings-on, may have given Gillian's disappearance a mention on the Trek-verse's version of Unsolved Mysteries.
The Whale Probe was built by the Xel'Naga.
The Xel'Naga discovered a primitive sentient species on Earth millions of years ago, who were the ancestors of today's whales, and sent the probe to check on their progress. After the fall of the Xel'Naga, the probe kept on monitoring Earth until it no longer recieved any transmissions. Due to a faulty FTL drive, it took two hundred years to get to Earth.