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Early scripts has the Klingons as a rogue group who commandiered a Romulan Bird of Prey.
And earlier than that, it was supposed to be Romulans period. It was only changed because Klingons were the better known bad guys of the franchise.
In the novelization, Saavik and David Marcus became romantically involved (the seeds for this were planted in the previous movie's novelization); this storyline was completely dropped from the films.
In the novelization, Saavik became pregnant with Spock's kid. This, too, was dropped.