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As always, Jonny Quest is loaded with Nightmare Fuel and Family-Unfriendly Death.
- The construction workers dying from exposure to nerve gas in "Escape to Questworld".
- Ezekiel Rage. An insane doomsday cultist who very nearly causes armageddon.
- An anaconda trying to eat a boy in "Realm of the Condor".
- This borders on Fridge Horror, but in one episode Ezekiel Rage gets aboard a spacecraft disguised as an astronaut to enact one of his usual plans. What happened to the astronaut!?!
- The Corrupt Corporate Executive being eaten alive by alligators in "Alligators and Okeechobee Vikings".
- The carnivorous... things from "Undersea Emergency". They eat a whale to the bones onscreen and kill multiple people.